Ldsc¶
Introduction¶
ldsc is a command line tool for estimating heritability and genetic correlation from GWAS summary statistics.
For more information, please check:
BioContainers: https://biocontainers.pro/tools/ldsc
Home page: https://github.com/bulik/ldsc
Versions¶
1.0.1
Commands¶
ldsc.py
munge_sumstats.py
Module¶
You can load the modules by:
module load biocontainers
module load ldsc
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run ldsc on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=ldsc
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers ldsc