Seidr¶
Introduction¶
Seidr
is a community gene network inference and exploration toolkit.
For more information, please check its website: https://biocontainers.pro/tools/seidr and its home page on Github.
Versions¶
0.14.2
Commands¶
correlation
seidr
mi
pcor
narromi
plsnet
llr-ensemble
svm-ensemble
genie3
tigress
el-ensemble
makeconv
genrb
gencfu
gencnval
gendict
tomsimilarity
Module¶
You can load the modules by:
module load biocontainers
module load seidr
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Seidr on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=seidr
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers seidr