Scgen¶
Introduction¶
scGen is a generative model to predict single-cell perturbation response across cell types, studies and species.
For more information, please check:
Home page: https://github.com/theislab/scgen
Versions¶
2.1.0
Commands¶
python
python3
Module¶
You can load the modules by:
module load biocontainers
module load scgen
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run scgen on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=scgen
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers scgen